PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_EE97B0B15.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 213aa    MW: 22946.3 Da    PI: 7.472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_EE97B0B15.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11249454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           +h ++Er+RR+++N+ +  Lr l P     + k+ + a+i   A+e+I++L
  Traes_2BS_EE97B0B15.1  2 SHIAVERNRRRQMNDHLKVLRALTPAF---YIKRCDQASIIGGAIEFIREL 49
                           89************************9...9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.583149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-11153No hitNo description
SuperFamilySSF474593.14E-15177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-9249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-8455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNDHLKV LRALTPAFYI KRCDQASIIG GAIEFIRELH TVLDALEAKK  60
KRRLCSPTPS PRSLLTCSTP TSAGGSASDV SPNSNGSSGG SYAITPVGAA VKELAACCNS  120
PAADVEARIS GANVLLRTLS GRIPGQAARI VALLESLHLE VLHVNISTMD DTVLHSFVLK  180
IGLECQLSVE DVAFEVQQTF CYHQELDYSS MAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862KKKRR
25863KKKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698225e-44EU969822.1 Zea mays clone 336092 DNA binding protein mRNA, complete cds.
GenBankKJ7269695e-44KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968634.12e-93PREDICTED: transcription factor MUTE
SwissprotQ9M8K62e-70MUTE_ARATH; Transcription factor MUTE
TrEMBLW5BPW01e-157W5BPW0_WHEAT; Uncharacterized protein
STRINGMLOC_57631.21e-108(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.11e-63bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]